Interoperability in the GENESIS 3.0 Software Federation : the NEURON Simulator as an Example

© 2013 Cornelis et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Poster presented at CNS 2013Non peer reviewe

Multigrid Solution of the 3D Elastic Subsurface Stress Field for Heterogeneous Materials in Contact Mechanics

The need to increase efficiency, stimulates the development of new materials tailored to specific applications and thermal/mechanical loading conditions, e.g. by controlling the property variations on a local scale: layered, graded, granular, porous and fibre-reinforced. For design and optimization of such materials the response to specific load conditions must be predicted which requires computer simulations. For applications in contact mechanics and lubrication failure criteria need to be developed which require the stress fields inside the (strongly heterogeneous) material induced by surface loading. The geometrical complexity of the subsurface topography and the need of an accurate solution require the use of a very fine discretization with a large number of elements, especially for three-dimensional problems. This requires optimally efficient numerical algorithms. In this paper the authors demonstrate the capability of Multigrid techniques to compute displacement and stress fields with great detail in strongly heterogeneous materials subject to surface loading, and in a contact mechanics application. Results are presented for a ceramic application and a contact problem of material with multiple inclusions. The efficiency of the method will allow extensive parameter studies with limited computational means. Moreover, it can efficiently be used to derive macroscopic stress-strain relations by simulations of microscopic problems. Also the method can be used for computational diagnostics of materials with specific heterogeneitie

Dendritic Excitability Modulates Dendritic Information Processing in a Purkinje Cell Model

Using an electrophysiological compartmental model of a Purkinje cell we quantified the contribution of individual active dendritic currents to processing of synaptic activity from granule cells. We used mutual information as a measure to quantify the information from the total excitatory input current (IGlu) encoded in each dendritic current. In this context, each active current was considered an information channel. Our analyses showed that most of the information was encoded by the calcium (ICaP) and calcium activated potassium (IKc) currents. Mutual information between IGlu and ICaP and IKc was sensitive to different levels of excitatory and inhibitory synaptic activity that, at the same time, resulted in the same firing rate at the soma. Since dendritic excitability could be a mechanism to regulate information processing in neurons we quantified the changes in mutual information between IGlu and all Purkinje cell currents as a function of the density of dendritic Ca (gCaP) and Kca (gKc) conductances. We extended our analysis to determine the window of temporal integration of IGlu by ICaP and IKc as a function of channel density and synaptic activity. The window of information integration has a stronger dependence on increasing values of gKc than on gCaP, but at high levels of synaptic stimulation information integration is reduced to a few milliseconds. Overall, our results show that different dendritic conductances differentially encode synaptic activity and that dendritic excitability and the level of synaptic activity regulate the flow of information in dendrites

Titanium miniscrews under continuous loading in a Pig jaw: a histological study

There is increasing interest in using titanium miniscrews for orthodontic anchorage. This experimental study aimed to evaluate the histological aspect of mandibular bone around miniscrews subjected to continuous forces in a pig. Three miniscrews were inserted on both sides of a pig mandible. Four weeks after implantation, a coil spring was fixed between two of the right miniscrews, while the left miniscrews remained unloaded. The pig was sacrificed nine weeks after implantation. Two right screws were lost during this period: one loaded screw and the unloaded one. Microradiographic and histological analysis revealed bone apposition in contact of about 1/3 of the unloaded screw surface, whereas the other 2/3 were surrounded by mesenchymal tissue. At distance of the implant, bone underwent important remodeling. No direct screw-bone contact was found around the loaded screw. Bone apposition and resorption were visible at distance of the screw, respectively on its traction and compression sides. In this preliminary study, osseointegration of the unloaded screw appeared more successful than that of the loaded ones. Further studies should be conducted during a longer follow-up period in order to define the degree of minimal osseointegration associated with an efficient anchorage

Identifying seasonal and temporal trends in the pressures experienced by hospitals related to unscheduled care

BACKGROUND: As part of an electronic dashboard operated by Public Health Wales, senior managers at hospitals in Wales report daily 'escalation' scores which reflect management opinion on the pressure a hospital is experiencing and ability to meet ongoing demand with respect to unscheduled care. An analysis was undertaken of escalation scores returned for 18 hospitals in Wales between the years 2006 and 2014 inclusive, with a view to identifying systematic temporal patterns in pressure experienced by hospitals in relation to unscheduled care. METHODS: Exploratory data analysis indicated the presence of within-year cyclicity in average daily scores over all hospitals. In order to quantify this cyclicity, a Generalised Linear Mixed Model was fitted which incorporated a trigonometric function (sine and cosine) to capture within-year change in escalation. In addition, a 7-level categorical day of the week effect was fitted as well as a 3-level categorical Christmas holiday variable based on patterns observed in exploration of the raw data. RESULTS: All of the main effects investigated were found to be statistically significant. Firstly, significant differences emerged in terms of overall pressure reported by individual hospitals. Furthermore, escalation scores were found to vary systematically within-year in a wave-like fashion for all hospitals (but not between hospitals) with the period of highest pressure consistently observed to occur in winter and lowest pressure in summer. In addition to this annual variation, pressure reported by hospitals was also found to be influenced by day of the week (low at weekends, high early in the working week) and especially low over the Christmas period but high immediately afterwards. CONCLUSIONS: Whilst unpredictable to a degree, quantifiable pressure experienced by hospitals can be anticipated according to models incorporating systematic temporal patterns. In the context of finite resources for healthcare services, these findings could optimise staffing schedules and inform resource utilisation